snakemake

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Preprocessing for wildcarded Snakemake rules
user_48796880
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4
1
67
snakemake python
AmbiguousRuleException when there is no ambiguity
user_112186870
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2
0
55
snakemake
How to generate multiple output files from single input file that does not share naming convention in snakemake?
user_164875570
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2
1
161
snakemake
Snakemake conda env path and Homer annotatePeaks.pl
user_66955570
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2
1
72
snakemake conda
How to target intermediary Snakemake rule that contains wildcards
user_74832110
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1
1
72
snakemake
Gracefully handle variable number of input and output files
user_11144530
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2
2
250
snakemake python
Snakemake: What will happen if the output file of a rule is already generated?
user_117963350
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2
1
134
snakemake
Refer to input or output files of another Snakemake rule
user_74832110
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2
1
174
snakemake
Force a certain rule to execute at the end
user_163080890
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3
2
227
snakemake workflow
snakemake randomly identifying outputs as incomplete
user_25833460
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4
1
698
snakemake
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