snakemake

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How to reference the output of a rule in snakemake
user_116372680
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3
1
168
snakemake workflow python
Snakemake explicit handling for Out Of Memory (OOM) failures
user_172005540
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3
1
114
nextflow snakemake
How can I reliably get status information from a running Snakemake workflow?
user_170795300
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1
0
77
snakemake workflow
Snakemake Singularity with Local Resources / Questions about Snakemake with --use-singularity
user_144804050
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4
2
422
singularity-container snakemake docker bioinformatics
Snakemake optional output with expand()
user_170785460
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2
3
315
snakemake bioinformatics python
Snakemake: Conda env download/install extremely slow on GKE
user_142123400
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2
0
222
snakemake google-kubernetes-engine conda
MissingRule Exception in Snakemake
user_170157500
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2
1
544
snakemake bioinformatics python
snakemake --profile PROFILE_NAME --dry-run results in "No config.yaml found", despite profile being located under .config/snakemake
user_138852000
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2
1
202
snakemake slurm hpc
How to embed auxiliary Snakemake workflows into main workflow structure
user_14747400
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2
0
73
snakemake bioinformatics design-patterns python
snakemake multiple parameters for multiple input and single output in snakemake. ConbineGVCFs gatk problem
user_81387710
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2
1
89
gatk snakemake python
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