snakemake

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Using R in a Snakemake workflow with Mambaforge
user_126221820
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206
mamba snakemake conda r
Run rule in Snakemake only if another rule fails, for the specific samples that it failed for?
user_162829990
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117
snakemake bioinformatics
snakemake - replacing command line parameters with wildcards by cluster profile
user_55584970
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135
snakemake
Running external scripts with wildcards in snakemake
user_32048900
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238
snakemake
use directories or all files in directories as input in snakemake
user_41454550
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549
snakemake
Can I define a default profile for snakemake?
user_139951590
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184
snakemake
How does snakemake know files created though a slurm job are incomplete when job is canceled?
user_123509660
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76
snakemake
Accessing the --default-remote-prefix within the Snakefile
user_87663850
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84
snakemake
Snakemake use the wrong environment
user_17982980
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2
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154
snakemake conda python
Snakemake: Job preemption can interrupt running jobs on clusters, how to make sure that the task is not considered as failed?
user_157925280
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2
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237
snakemake slurm jobs preemption
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