snakemake

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Accessing the path of the `--configfile` within Snakefile
user_118907890
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2
3
261
snakemake config
Snakemake rule for analysis where a single result file is produced for diff parameters, and parameter is coming from another rule output content
user_40051520
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1
1
64
snakemake python
Can a snakemake job mistakenly run twice at the same time?
user_156108760
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2
1
100
snakemake
Possible to have wildcard as dictionary key in snakemake rule output?
user_123509660
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4
3
483
snakemake
Execute snakemake for iterative mapping
user_114259320
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2
1
85
snakemake bioinformatics mapping iteration loops
Snakemake --use-conda with --cluster and NFS4 storage
user_62814600
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2
1
209
torque snakemake qsub nfs
Acess scripts in external snakemake directory without defining absolute path
user_67392750
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4
2
443
snakemake
Using cutadapt adapter file inputs in Snakemake
user_48270400
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2
1
191
snakemake bioinformatics shell python bash
snakemake: conda env relative path to the specific smk file, not the execution path (i.e. Snakefile with rule all)
user_76362840
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2
0
285
snakemake conda bioinformatics
MD task with `snakemake`
user_145602690
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2
1
66
snakemake bioinformatics pipeline automation python
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