snakemake

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how to quickly identify if a rule in Snakemake needs an input function
user_81767630
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3
3
96
wildcard-expansion snakemake directed-acyclic-graphs wildcard python
Snakemake: Mismatched Wildcards Variable Values for "output" Rule
user_112058670
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1
2
69
snakemake cp directory-structure wildcard python
Snakemake using the first argument of a list as a wildcard
user_32245220
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2
1
61
snakemake
How to load files in a notebook when using Snakemake?
user_3812810
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1
2
73
snakemake jupyter-notebook relative-path python
Using Docker with Snakemake (as motivated by the Snakemake documentation) does not provide a true docker container?
user_133927960
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2
0
54
singularity-container snakemake conda docker
snakemake if else statement within rule input
user_187137670
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2
1
57
snakemake
How do I set the default python version for conda envs in snakemake
user_166118090
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3
0
41
snakemake conda wrapper python
Snakemake fasterq-dump wrapper AttributeError: 'Wildcards' object has no attribute 'accession'
user_126515930
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1
1
44
snakemake
Using expand to concatenate .tab files in subdirectories which are variables themselves
user_32245220
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1
1
27
wildcard-expansion snakemake cat python
Apply snakemake rule on all generated files
user_27417110
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1
1
44
snakemake linux python
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