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snakemake

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How can I globally set stderr and stdout redirection into log files in Snakemake?
user_17269860
• asked Dec 26, 2018
5
0
540
snakemake
How does Snakemake parse slurm jobid with --cluster-status and sacct used
user_60496440
• asked Dec 23, 2018
3
1
554
snakemake slurm
Snakemake Using expand with dictionary
user_17982980
• asked Nov 13, 2018
2
2
2036
expand snakemake
Printing simplified DAG plot with snakemake
user_13865000
• asked Nov 13, 2018
11
1
5432
snakemake
snakemake rule calls a shell script but exits after first command
user_96594510
• asked Nov 10, 2018
3
1
709
snakemake for-loop shell
Arithmetic on "threads" wildcard in rule definition
user_4597800
• asked Oct 30, 2018
3
1
252
snakemake multithreading python
Snakemake wants to run job although output file already exists
user_4597800
• asked Sep 19, 2018
5
1
1320
snakemake offline python
Snakemake: Ignore Rprofile when executing an R script
user_51123290
• asked Sep 17, 2018
4
2
555
snakemake r
Is it possible to print commands instead of rules in snakemake dry run?
user_29623440
• asked Nov 21, 2017
4
2
3042
snakemake
using conda environments in simple snakemake workflows
user_89334790
• asked Nov 13, 2017
3
1
991
snakemake conda
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