snakemake

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Error submitting jobs on a condor cluster with snakemake
user_117232510
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4
1
415
snakemake
How to avoid running Snakemake rule after input or intermediary output file was updated
user_100019030
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14
3
3009
snakemake workflow caching build file
How to use output directories to aggregate files (and receive more informative error messages)?
user_116662590
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2
3
192
snakemake
How to get a rule that would work the same on a directory and its sub-directories
user_20828360
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2
2
45
snakemake
Snakemake - How to use every line of input file as wildcard
user_101019040
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4
2
1105
snakemake python
How to fix conda "ResolvePackageNotFound" when building a conda recipe
user_73220010
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3
1
4619
snakemake conda build
Is there a way to set parameters for the Java VM when using a Snakemake wrapper?
user_23255620
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2
2
383
picard snakemake
snakemake script access to stdin / stdout for stream processing
user_23255620
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2
2
492
pysam snakemake
fastqc using Snakemake
user_33812150
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3
1
1698
snakemake bioinformatics
Snakemake and Pandas syntax: Getting sample specific parameters from the sample table
user_33812150
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3
1
625
snakemake bioinformatics
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