snakemake

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name input/output files in snakemake according to variable (not wildcard) in config.yaml
user_55584970
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2
1
991
snakemake if-statement variables
sbatch: error: Batch job submission failed: Socket timed out on send/recv operation when running Snakemake
user_119378540
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5
1
6651
snakemake sbatch slurm sockets
Snakemake report: Include html report in report
user_20828360
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2
1
226
snakemake restructuredtext report
Snakemake removes underscores in --config values?
user_73051660
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3
2
92
snakemake python
Where can I find an example of a file workflow.rst for generating snakemake reports?
user_20828360
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2
1
555
snakemake reporting
Snakemake wrappers fails to open environment file: HTTP Error 404: Not Found
user_28627190
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4
1
511
snakemake
Snakemake: Cluster multiple jobs together
user_25792460
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3
2
781
snakemake hpc
split bam by clusters and then merge bam by cluster using checkpoint
user_38138030
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2
1
253
snakemake python
Local singularity image in snakemake workflow on AWS eks with --kubernetes option
user_114425320
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3
0
644
singularity-container snakemake amazon-eks kubernetes
How to stop snakemake from adding non file endings to wildcards when using expand function? (.g.vcf fails, .vcf works)
user_112647730
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2
1
39
snakemake
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