snakemake

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Link rule_1 output targetting files with rule_2 input targetting the files' folder [snakemake]
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30
snakemake
Access snakemake expand-ed variables in a script
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2
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60
snakemake
Generate many files with wildcard, then merge into one
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84
wildcard-expansion snakemake merge
Passing wildcard values in params in snakemake
user_91977260
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278
snakemake python
Snakemake: MissingInputException - Missing input files for rule all
user_182974010
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504
snakemake python
How to use a wildcard within expand function parameters in snakemake?
user_182780730
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3
2
252
snakemake combinatorics wildcard dictionary python
How to use pandas within snakemake pipelines
user_91977260
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3
1
166
snakemake pandas directed-acyclic-graphs pipeline python
Array of values as input in Snakemake workflows
user_5312220
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2
3
135
nextflow snakemake pandas directed-acyclic-graphs python
Snakemake input rule defintion via lambda + Pandas dataframe
user_93004410
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2
1
153
snakemake pandas directed-acyclic-graphs parameters python
Snakefile how to mix wildcards and variables
user_16377980
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2
2
313
snakemake python
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