How to subset a SpatRasterDataset from the terra package?

Viewed 342

I am trying to select several rasters from a SpatRasterDataset using the terra package in R. However when I try to select x rasters at once, the names show only the first x raster names, regardless of which rasters I try to select. Selecting a single raster seems to work fine, although the name given to it is not present.

So how do I properly subset a SpatRasterDataset keeping the correct names associated with rasters?

Reproducible example:

# Create SpatRasterDataset
r1 <- rast(matrix(1:100, nrow=10, ncol=10))
r2 <- rast(matrix(200:101, nrow=10, ncol=10))
r3 <- rast(matrix(c(2,200), nrow=10, ncol=10))
s <- sds(r1,r2,r3)

# Name rasters
names(s) <- c("A","B","C")
names(s)

# Add to list
l <- list(s)
l[[1]]
l[[1]][1:2] # shows rasters A,B
l[[1]][2:3] # also shows rasters A,B
l[[1]][c("B","C")] # shows rasters A,B
l[[1]][3] 
image(l[[1]][3]) # shows correct raster

# Subset SpatRasterDataset
s2 <- l[[1]][2:3] # select two rasters
names(s2) # names A, B
s2[1] # actually raster B
s2[2] # actually raster C

s3 <- l[[1]][3] # select one rasters
names(s3) # has some other name
s3 # has correct raster
1 Answers

The names of a SpatRasterDataset do not correspond to the (layer) names of a SpatRaster.

With your example

library(terra)
r1 <- rast(matrix(1:100, nrow=10, ncol=10))
r2 <- rast(matrix(200:101, nrow=10, ncol=10))
r3 <- rast(matrix(c(2,200), nrow=10, ncol=10))
s <- sds(r1,r2,r3)
names(s) <- c("A","B","C")

You can subset SpatRasterDataset s like this to get a new SpatRasterDataset:

s[2:3]
s[3, drop=FALSE]

Or like this to get a SpatRaster

s[3]

"A", "B", and "C" are names of the sub-datasets (variables), not the (layer) names of the SpatRasters. These cannot be the same because each sub-dataset has a single name, whereas a SpatRaster can have many (layer-) names.

For example, you might have

rr1 <- c(r1, r2, r3)
names(rr1) <- c("x", "y", "z")
rr2 <- rr1[[1:2]] / 10
rr3 <- r1 * 10
ss <- sds(rr1,rr2,rr3)
names(ss) <- c("A","B","C")

ss 
#class       : SpatRasterDataset 
#subdatasets : 3 
#dimensions  : 10, 10 (nrow, ncol)
#nlyr        : 3, 2, 1 
#resolution  : 1, 1  (x, y)
#extent      : 0, 10, 0, 10  (xmin, xmax, ymin, ymax)
#coord. ref. :  
#source(s)   : memory 
#names       : A, B, C 

ss[1]
#class       : SpatRaster 
#dimensions  : 10, 10, 3  (nrow, ncol, nlyr)
#resolution  : 1, 1  (x, y)
#extent      : 0, 10, 0, 10  (xmin, xmax, ymin, ymax)
#coord. ref. :  
#sources     : memory  
               memory  
               memory  
#varnames    : a 
#              b 
#              c 
#names       :   x,   y,   z 
#min values  :   1, 101,   2 

A SpatRaster can have a variable name which you can set with

varnames(r1) <- "A" 

but that is probably not what you are after.

Related