I'm building embedding vectors which I want to view via tensorboard (with TSNE 2D/3D algs)
My codes look:
logdir = os.path.join("./logs/fit/l", datetime.datetime.now().strftime("%Y%m%d-%H%M%S"))
w = tf.summary.create_file_writer(logdir)
projector_distances = train_distances.reshape(train_distances.shape[0], -1)
weights = tf.Variable(projector_distances, name="latent_test_3")
checkpoint = tf.train.Checkpoint(latent_test=weights)
checkpoint.save(os.path.join(logdir, "embedding.ckpt"))
with open(os.path.join(logdir, 'tags.tsv'), "w") as f:
for tag in y_test:
f.write("{}\n".format(tag))
from tensorboard.plugins import projector
config = projector.ProjectorConfig()
embedding = config.embeddings.add()
embedding.tensor_name = "latent_test/.ATTRIBUTES/VARIABLE_VALUE"
embedding.metadata_path = 'tags.tsv'
projector.visualize_embeddings(logdir, config)
In tensorboard I can view the results of PCA, but TSNE or UMAP dosn't work (nothing happen and the buttons are disable):
More info:
train_distances: (938, 14, 14, 8)
projector_distances: (938, 1568)
I can run tsne algorithm from code (for same data):
from sklearn.manifold import TSNE
model = TSNE(n_components=2, random_state=0)
y = model.fit_transform(projector_distances)
If I use bigger dataset (with more than 1568 samples (i.e number of samples >= number of features) I can view the results from tensorboard.
- What is wrong ?
- Why I can run
tsne(from code) for small dataset, while I can't runtsnefromtensorboard?

