I have a gargantuan .gz file that I can read on Perl/Linux via
open my $zc, 'zcat GCF_000001405.25.gz|';
but when I run this code on a Mac (Perl 5.32.1) I get an error:
zcat: can't stat: GCF_000001405.25.gz (GCF_000001405.25.gz.Z): No such file or directory
so following https://serverfault.com/questions/570024/zcat-gzcat-works-in-linux-not-on-osx-general-linux-osx-compatibility
I tried
open my $zc, 'zcat < GCF_000001405.25.gz';
but this gives the error:
readline() on closed filehandle $zc at split.by.chr.pl line 32
I am aware of Compress::Zlib but it is very slow How to read data in .gz file very fast in perl programming
How can I change the open line in my perl script so that it will work on a Mac?