So probably this is some odd setting I've added, but removing my .Renviron/.Rprofile/~/.R/Makevars don't seem to help. Grateful for any suggestions on how to debug.
BiocManager::install("DropletUtils") leads to this error (normal output up to this point omitted):
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘DropletUtils’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/home/alan/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-DropletUtils/00new/DropletUtils/libs/DropletUtils.so':
/home/alan/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-DropletUtils/00new/DropletUtils/libs/DropletUtils.so: undefined symbol: __ubsan_vptr_type_cache
Error: loading failed
Execution halted
sessionInfo()
R version 4.0.5 (2021-03-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.5 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/libopenblasp-r0.2.20.so
locale:
[1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_GB.UTF-8 LC_COLLATE=en_GB.UTF-8
[5] LC_MONETARY=en_GB.UTF-8 LC_MESSAGES=en_GB.UTF-8
[7] LC_PAPER=en_GB.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] BiocManager_1.30.12 compiler_4.0.5 tools_4.0.5
[4] parallel_4.0.5