I'm running a Spark Scala EMR Job with 12 Executors, m5.4xlarge instance type, 51GB of Heap, using Spark 2.4.6 and EMR 5.31.0. In my EMR cluster I also have the following configuration:
[{"classification":"spark", "properties":{"maximizeResourceAllocation":"true"}, "configurations":[]}]
I dont understand where my OOM error is coming from and what I can do to fix it. Before I write I do a join, groupBy,groupBy, and another join. How can I figure out what is causing the OOM error?
DF.withColumn("hour", hour(col("start")))
.withColumn("day", dayofmonth(col("start")))
.withColumn("month", month(col("start")))
.withColumn("year", year(col("start")))
.write
.partitionBy("year", "month", "day", "hour")
.mode(SaveMode.Overwrite)
.parquet(outputPath)
Caused by: org.apache.spark.memory.SparkOutOfMemoryError: Unable to acquire 16384 bytes of memory, got 0
at org.apache.spark.memory.MemoryConsumer.throwOom(MemoryConsumer.java:157)
at org.apache.spark.memory.MemoryConsumer.allocateArray(MemoryConsumer.java:98)
at org.apache.spark.util.collection.unsafe.sort.UnsafeInMemorySorter.<init>(UnsafeInMemorySorter.java:128)
at org.apache.spark.util.collection.unsafe.sort.UnsafeExternalSorter.<init>(UnsafeExternalSorter.java:161)
at org.apache.spark.util.collection.unsafe.sort.UnsafeExternalSorter.create(UnsafeExternalSorter.java:128)
at org.apache.spark.sql.execution.ExternalAppendOnlyUnsafeRowArray.add(ExternalAppendOnlyUnsafeRowArray.scala:115)
at org.apache.spark.sql.execution.window.WindowExec$$anonfun$11$$anon$1.fetchNextPartition(WindowExec.scala:343)
at org.apache.spark.sql.execution.window.WindowExec$$anonfun$11$$anon$1.next(WindowExec.scala:369)
at org.apache.spark.sql.execution.window.WindowExec$$anonfun$11$$anon$1.next(WindowExec.scala:303)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage22.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$13$$anon$1.hasNext(WholeStageCodegenExec.scala:585)
at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:440)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at org.apache.spark.shuffle.sort.UnsafeShuffleWriter.write(UnsafeShuffleWriter.java:188)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:99)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:55)
at org.apache.spark.scheduler.Task.run(Task.scala:123)
at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1405)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
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