I'm trying to render a Rmarkdown file in linux and eventually I want it to generate a dynamic .html file for people to checkout. The command I'm using is
R -e "rmarkdown::render('./test_rshiny2.Rmd',output_file='./results/Diagnos_Plot.html')".
However I kept getting this error:
Error: path for html_dependency not provided.
Below is my the session info:
R version 3.6.3 (2020-02-29)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.3 LTS
Matrix products: default
BLAS: /opt/htcf/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/r-3.6.3-wjv45rejzld4tqrpekyen7mtmm2ko6qo/rlib/R/lib/libRblas.so
LAPACK: /opt/htcf/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/r-3.6.3-wjv45rejzld4tqrpekyen7mtmm2ko6qo/rlib/R/lib/libRlapack.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_3.6.3
Can anyone here provide some help? Thanks so much!!