I try to docker-compose up my flask app, but i get errors when i try to do that... I think it might be something with numpy or sklearn, but i couldn't figure it out. [error from terminal][1]Any advice can help, here is my Dockerfile:
FROM python:3.6-alpine
WORKDIR /code
ENV FLASK_APP=app.py
ENV FLASK_RUN_HOST=0.0.0.0
RUN pip3 install --upgrade pip setuptools
RUN apk add g++
RUN apk update && apk add postgresql-dev gcc python3-dev musl-dev \
gfortran musl-dev
RUN pip install psycopg2
RUN apk add --no-cache gcc musl-dev linux-headers
COPY requirements.txt requirements.txt
RUN pip install -r requirements.txt
EXPOSE 5000
COPY . .
CMD ["flask", "run"]
And here is an error from my vs code terminal, It says something abou lapack but I dont understand what I should do in Dockerfile:
ERROR: Command errored out with exit status 1:
command: /usr/local/bin/python /usr/local/lib/python3.6/site-packages/pip install --ignore-installed --no-user --prefix /tmp/pip-build-env-y4lyu4_s/overlay --no-warn-script-location --no-binary :none: --only-binary :none: -i https://pypi.org/simple -- setuptools wheel 'Cython>=0.28.5' 'numpy==1.13.3; python_version=='"'"'3.6'"'"' and platform_system!='"'"'AIX'"'"' and platform_python_implementation == '"'"'CPython'"'"'' 'numpy==1.14.0; python_version=='"'"'3.6'"'"' and platform_system!='"'"'AIX'"'"' and platform_python_implementation != '"'"'CPython'"'"'' 'numpy==1.14.5; python_version=='"'"'3.7'"'"' and platform_system!='"'"'AIX'"'"'' 'numpy==1.17.3; python_version>='"'"'3.8'"'"' and platform_system!='"'"'AIX'"'"'' 'numpy==1.16.0; python_version=='"'"'3.6'"'"' and platform_system=='"'"'AIX'"'"'' 'numpy==1.16.0; python_version=='"'"'3.7'"'"' and platform_system=='"'"'AIX'"'"'' 'numpy==1.17.3; python_version>='"'"'3.8'"'"' and platform_system=='"'"'AIX'"'"'' 'scipy>=0.19.1'
cwd: None
Complete output (164 lines):
Ignoring numpy: markers 'python_version == "3.6" and platform_system != "AIX" and platform_python_implementation != "CPython"' don't match your environment
Ignoring numpy: markers 'python_version == "3.7" and platform_system != "AIX"' don't match your environment
Ignoring numpy: markers 'python_version >= "3.8" and platform_system != "AIX"' don't match your environment
Ignoring numpy: markers 'python_version == "3.6" and platform_system == "AIX"' don't match your environment
Ignoring numpy: markers 'python_version == "3.7" and platform_system == "AIX"' don't match your environment
Ignoring numpy: markers 'python_version >= "3.8" and platform_system == "AIX"' don't match your environment
Collecting Cython>=0.28.5
Using cached Cython-0.29.21-py2.py3-none-any.whl (974 kB)
Collecting numpy==1.13.3
Downloading numpy-1.13.3.zip (5.0 MB)
Collecting scipy>=0.19.1
Downloading scipy-1.5.4.tar.gz (25.2 MB)
Installing build dependencies: started
Installing build dependencies: still running...
Installing build dependencies: still running...
Installing build dependencies: still running...
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing wheel metadata: started
Preparing wheel metadata: finished with status 'error'
ERROR: Command errored out with exit status 1:
command: /usr/local/bin/python /usr/local/lib/python3.6/site-packages/pip/_vendor/pep517/_in_process.py prepare_metadata_for_build_wheel /tmp/tmpjy5opf59
cwd: /tmp/pip-install-nfhvrlyl/scipy_e0c426d79aeb421b8a1f50c312717b76
Complete output (137 lines):
lapack_opt_info:
lapack_mkl_info:
customize UnixCCompiler
libraries mkl_rt not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/']
NOT AVAILABLE
openblas_lapack_info:
customize UnixCCompiler
customize UnixCCompiler
libraries openblas not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/']
NOT AVAILABLE
openblas_clapack_info:
customize UnixCCompiler
customize UnixCCompiler
libraries openblas,lapack not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/']
NOT AVAILABLE
atlas_3_10_threads_info:
Setting PTATLAS=ATLAS
customize UnixCCompiler
libraries tatlas,tatlas not found in /usr/local/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/local/lib
customize UnixCCompiler
libraries tatlas,tatlas not found in /usr/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib
customize UnixCCompiler
libraries tatlas,tatlas not found in /usr/lib/
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib/
<class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
NOT AVAILABLE
atlas_3_10_info:
customize UnixCCompiler
libraries satlas,satlas not found in /usr/local/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/local/lib
customize UnixCCompiler
libraries satlas,satlas not found in /usr/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib
customize UnixCCompiler
libraries satlas,satlas not found in /usr/lib/
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib/
<class 'numpy.distutils.system_info.atlas_3_10_info'>
NOT AVAILABLE
atlas_threads_info:
Setting PTATLAS=ATLAS
customize UnixCCompiler
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/local/lib
customize UnixCCompiler
libraries ptf77blas,ptcblas,atlas not found in /usr/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib
customize UnixCCompiler
libraries ptf77blas,ptcblas,atlas not found in /usr/lib/
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib/
<class 'numpy.distutils.system_info.atlas_threads_info'>
NOT AVAILABLE
atlas_info:
customize UnixCCompiler
libraries f77blas,cblas,atlas not found in /usr/local/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/local/lib
customize UnixCCompiler
libraries f77blas,cblas,atlas not found in /usr/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib
customize UnixCCompiler
libraries f77blas,cblas,atlas not found in /usr/lib/
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib/
<class 'numpy.distutils.system_info.atlas_info'>
NOT AVAILABLE
lapack_info:
customize UnixCCompiler
libraries lapack not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/']
NOT AVAILABLE
lapack_src_info:
NOT AVAILABLE
NOT AVAILABLE
setup.py:462: UserWarning: Unrecognized setuptools command ('dist_info --egg-base /tmp/pip-modern-metadata-4ervgef2'), proceeding with generating Cython sources and expanding templates
' '.join(sys.argv[1:])))
Running from SciPy source directory.
/tmp/pip-build-env-255loami/overlay/lib/python3.6/site-packages/numpy/distutils/system_info.py:624: UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
self.calc_info()
/tmp/pip-build-env-255loami/overlay/lib/python3.6/site-packages/numpy/distutils/system_info.py:624: UserWarning:
Lapack (http://www.netlib.org/lapack/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [lapack]) or by setting
the LAPACK environment variable.
self.calc_info()
/tmp/pip-build-env-255loami/overlay/lib/python3.6/site-packages/numpy/distutils/system_info.py:624: UserWarning:
Lapack (http://www.netlib.org/lapack/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [lapack_src]) or by setting
the LAPACK_SRC environment variable.
self.calc_info()
Traceback (most recent call last):
File "/usr/local/lib/python3.6/site-packages/pip/_vendor/pep517/_in_process.py", line 280, in <module>
main()
File "/usr/local/lib/python3.6/site-packages/pip/_vendor/pep517/_in_process.py", line 263, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
File "/usr/local/lib/python3.6/site-packages/pip/_vendor/pep517/_in_process.py", line 133, in prepare_metadata_for_build_wheel
return hook(metadata_directory, config_settings)
File "/tmp/pip-build-env-255loami/overlay/lib/python3.6/site-packages/setuptools/build_meta.py", line 161, in prepare_metadata_for_build_wheel
self.run_setup()
File "/tmp/pip-build-env-255loami/overlay/lib/python3.6/site-packages/setuptools/build_meta.py", line 254, in run_setup
self).run_setup(setup_script=setup_script)
File "/tmp/pip-build-env-255loami/overlay/lib/python3.6/site-packages/setuptools/build_meta.py", line 145, in run_setup
exec(compile(code, __file__, 'exec'), locals())
File "setup.py", line 583, in <module>
setup_package()
File "setup.py", line 579, in setup_package
setup(**metadata)
File "/tmp/pip-build-env-255loami/overlay/lib/python3.6/site-packages/numpy/distutils/core.py", line 135, in setup
config = configuration()
File "setup.py", line 477, in configuration
raise NotFoundError(msg)
numpy.distutils.system_info.NotFoundError: No lapack/blas resources found.
----------------------------------------
ERROR: Command errored out with exit status 1: /usr/local/bin/python /usr/local/lib/python3.6/site-packages/pip/_vendor/pep517/_in_process.py prepare_metadata_for_build_wheel /tmp/tmpjy5opf59 Check the logs for full command output.
----------------------------------------
ERROR: Command errored out with exit status 1: /usr/local/bin/python /usr/local/lib/python3.6/site-packages/pip install --ignore-installed
--no-user --prefix /tmp/pip-build-env-y4lyu4_s/overlay --no-warn-script-location --no-binary :none: --only-binary :none: -i https://pypi.org/simple -- setuptools wheel 'Cython>=0.28.5' 'numpy==1.13.3; python_version=='"'"'3.6'"'"' and platform_system!='"'"'AIX'"'"' and platform_python_implementation == '"'"'CPython'"'"'' 'numpy==1.14.0; python_version=='"'"'3.6'"'"' and platform_system!='"'"'AIX'"'"' and platform_python_implementation != '"'"'CPython'"'"'' 'numpy==1.14.5; python_version=='"'"'3.7'"'"' and platform_system!='"'"'AIX'"'"'' 'numpy==1.17.3; python_version>='"'"'3.8'"'"' and platform_system!='"'"'AIX'"'"'' 'numpy==1.16.0; python_version=='"'"'3.6'"'"' and platform_system=='"'"'AIX'"'"'' 'numpy==1.16.0; python_version=='"'"'3.7'"'"' and platform_system=='"'"'AIX'"'"'' 'numpy==1.17.3; python_version>='"'"'3.8'"'"' and platform_system=='"'"'AIX'"'"'' 'scipy>=0.19.1' Check the logs for full command output.
ERROR: Service 'web' failed to build : The command '/bin/sh -c pip install -r requirements.txt' returned a non-zero code: 1