RewriteBase /subfolder
You cannot set multiple RewriteBase directives in the same .htaccess file. The last instance "wins" and controls the entire file. So, in the .htaccess file you posted, RewriteBase / set in the WordPress code block, is what is actually set for the file.
However, none of the directives actually make use of the RewriteBase directive anyway - so none of the RewriteBase directives are actually doing anything. The RewriteBase directive only applies where you have set a relative path (not starting with a slash) in the RewriteRule substitution string.
but I don’t understand why as the two RewriteCond should intercept only the Yii app URIs.
RewriteCond %{REQUEST_URI} ^/subfolder
RewriteCond %{REQUEST_URI} !^/subfolder/web
RewriteRule ^assets/(.*)$ /web/assets/$1 [L]
Presumably it's these two RewriteCond directives you are referring to... in which case these two conditions aren't really doing anything. RewriteCond directives only apply to the first RewriteRule directive that follows, so it only applies to the directive that rewrites your assets.
However, this RewriteRule is matching /assets in the document root, not /subfolder/assets, which is presumably the requirement - so these rules will fail to match.
But with these rules added all Wordpress’ pages are handled (or attempted) through Yii, so this breaks the blog installation.
The rules will certainly "break the blog installation", however, they don't appear to get as far as handling the request "through Yii". There's nothing that actually rewrites the request to /subfolder. However, the following directive unconditionally rewrites everything to the /web directory in the document root (which presumably does not exist) - so this will certainly "break" all the WordPress URLs.
RewriteRule (.*) /web/$1 [L]
In fact, I would have expected this to have created a rewrite-loop (500 Internal Server Error response)?! Unless you have a subdirectory /web off the document root which also contains an .htaccess file containing mod_rewrite directives? But that seems unlikely, since the /web directory should be inside the /subfolder directory?
Try the following instead:
RewriteEngine On
RewriteRule ^(subfolder)/(assets|css|js|images)/(.*) $1/web/$2/$3 [L]
RewriteRule ^(subfolder)/((?!web).*) $1/web/$2 [L]
RewriteRule ^subfolder/web/index\.php - [L]
RewriteCond %{REQUEST_FILENAME} !-f
RewriteCond %{REQUEST_FILENAME} !-d
RewriteRule ^(subfolder)/. $1/web/index.php [L]
# BEGIN WordPress
:
No need for the <IfModule> wrapper. Or the RewriteBase directive.
Alternatively
However, it would be preferable to move these directives into their own .htaccess file in the root of the project, ie. /subfolder/.htaccess - which I believe is what the linked "guide" is suggesting. This keeps the two projects entirely separate. And avoids having to explicitly include the /subfolder in the directives.
In addition, creating a another .htaccess file in the web subdirectory, ie. /subfolder/web/.htaccess. This is again, suggested in the linked "guide". However, this also negates the need for the additional directives to route the request in the parent .htaccess file.
For example, putting these changes together, the /.htaccess file in the document root should only have the WordPress directives. And then...
/subfolder/.htaccess
RewriteEngine On
RewriteRule ^((?:assets|css|js|images)/.*) web/$1 [L]
RewriteRule ^((?!web).*) web/$1 [L]
/subfolder/web/.htaccess
RewriteEngine On
RewriteRule ^index\.php$ - [L]
RewriteCond %{REQUEST_FILENAME} !-f
RewriteCond %{REQUEST_FILENAME} !-d
RewriteRule . index.php [L]
Again, no need for the RewriteBase directive here - in fact, using RewriteBase here arguably complicates things. When in the /subfolder/web/.htaccess file, all relative URL-paths are relative to that directory.
So, requesting /subfolder/foo gets internally rewritten by the /subfolder/.htaccess file to /subfolder/web/foo. Which is then caught by the /subfolder/web/.htaccess file (preventing a rewrite loop) and internally rewritten to /subfolder/web/index.php (providing foo does not exist as a physical file).