Installing scipy on my host machine:
❯ pip install scipy
Collecting scipy
Downloading scipy-1.5.4-cp38-cp38-manylinux1_x86_64.whl (25.8 MB)
|████████████████████████████████| 25.8 MB 2.4 MB/s
Requirement already satisfied: numpy>=1.14.5 in /home/tomas/.pyenv/versions/3.8.2/envs/3.8.2@appdaemon/lib/python3.8/site-packages (from scipy) (1.19.4)
Installing collected packages: scipy
Successfully installed scipy-1.5.4
Trying to install scipy in my Docker container (acockburn/appdaemon:latest):
/conf # pip install scipy
Collecting scipy
Downloading scipy-1.5.4.tar.gz (25.2 MB)
|████████████████████████████████| 25.2 MB 274 kB/s
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing wheel metadata ... error
ERROR: Command errored out with exit status 1:
command: /usr/local/bin/python /usr/local/lib/python3.8/site-packages/pip/_vendor/pep517/_in_process.py prepare_metadata_for_build_wheel /tmp/tmpdj2d13lc
cwd: /tmp/pip-install-o5ltw_ig/scipy
Complete output (139 lines):
lapack_opt_info:
lapack_mkl_info:
customize UnixCCompiler
libraries mkl_rt not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/']
NOT AVAILABLE
openblas_lapack_info:
customize UnixCCompiler
customize UnixCCompiler
libraries openblas not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/']
NOT AVAILABLE
openblas_clapack_info:
customize UnixCCompiler
customize UnixCCompiler
libraries openblas,lapack not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/']
NOT AVAILABLE
flame_info:
customize UnixCCompiler
libraries flame not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/']
NOT AVAILABLE
atlas_3_10_threads_info:
Setting PTATLAS=ATLAS
customize UnixCCompiler
libraries lapack_atlas not found in /usr/local/lib
customize UnixCCompiler
libraries tatlas,tatlas not found in /usr/local/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib
customize UnixCCompiler
libraries tatlas,tatlas not found in /usr/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib/
customize UnixCCompiler
libraries tatlas,tatlas not found in /usr/lib/
NOT AVAILABLE
atlas_3_10_info:
customize UnixCCompiler
libraries lapack_atlas not found in /usr/local/lib
customize UnixCCompiler
libraries satlas,satlas not found in /usr/local/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib
customize UnixCCompiler
libraries satlas,satlas not found in /usr/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib/
customize UnixCCompiler
libraries satlas,satlas not found in /usr/lib/
NOT AVAILABLE
atlas_threads_info:
Setting PTATLAS=ATLAS
customize UnixCCompiler
libraries lapack_atlas not found in /usr/local/lib
customize UnixCCompiler
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib
customize UnixCCompiler
libraries ptf77blas,ptcblas,atlas not found in /usr/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib/
customize UnixCCompiler
libraries ptf77blas,ptcblas,atlas not found in /usr/lib/
NOT AVAILABLE
atlas_info:
customize UnixCCompiler
libraries lapack_atlas not found in /usr/local/lib
customize UnixCCompiler
libraries f77blas,cblas,atlas not found in /usr/local/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib
customize UnixCCompiler
libraries f77blas,cblas,atlas not found in /usr/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib/
customize UnixCCompiler
libraries f77blas,cblas,atlas not found in /usr/lib/
NOT AVAILABLE
accelerate_info:
NOT AVAILABLE
lapack_info:
customize UnixCCompiler
libraries lapack not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/']
NOT AVAILABLE
lapack_src_info:
NOT AVAILABLE
NOT AVAILABLE
setup.py:460: UserWarning: Unrecognized setuptools command ('dist_info --egg-base /tmp/pip-modern-metadata-ksceopr3'), proceeding with generating Cython sources and expanding templates
warnings.warn("Unrecognized setuptools command ('{}'), proceeding with "
Running from SciPy source directory.
/tmp/pip-build-env-4401a2iy/overlay/lib/python3.8/site-packages/numpy/distutils/system_info.py:1712: UserWarning:
Lapack (http://www.netlib.org/lapack/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [lapack]) or by setting
the LAPACK environment variable.
if getattr(self, '_calc_info_{}'.format(lapack))():
/tmp/pip-build-env-4401a2iy/overlay/lib/python3.8/site-packages/numpy/distutils/system_info.py:1712: UserWarning:
Lapack (http://www.netlib.org/lapack/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [lapack_src]) or by setting
the LAPACK_SRC environment variable.
if getattr(self, '_calc_info_{}'.format(lapack))():
Traceback (most recent call last):
File "/usr/local/lib/python3.8/site-packages/pip/_vendor/pep517/_in_process.py", line 257, in
main()
File "/usr/local/lib/python3.8/site-packages/pip/_vendor/pep517/_in_process.py", line 240, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
File "/usr/local/lib/python3.8/site-packages/pip/_vendor/pep517/_in_process.py", line 110, in prepare_metadata_for_build_wheel
return hook(metadata_directory, config_settings)
File "/tmp/pip-build-env-4401a2iy/overlay/lib/python3.8/site-packages/setuptools/build_meta.py", line 161, in prepare_metadata_for_build_wheel
self.run_setup()
File "/tmp/pip-build-env-4401a2iy/overlay/lib/python3.8/site-packages/setuptools/build_meta.py", line 253, in run_setup
super(_BuildMetaLegacyBackend,
File "/tmp/pip-build-env-4401a2iy/overlay/lib/python3.8/site-packages/setuptools/build_meta.py", line 145, in run_setup
exec(compile(code, __file__, 'exec'), locals())
File "setup.py", line 583, in
setup_package()
File "setup.py", line 579, in setup_package
setup(**metadata)
File "/tmp/pip-build-env-4401a2iy/overlay/lib/python3.8/site-packages/numpy/distutils/core.py", line 137, in setup
config = configuration()
File "setup.py", line 477, in configuration
raise NotFoundError(msg)
numpy.distutils.system_info.NotFoundError: No lapack/blas resources found.
----------------------------------------
ERROR: Command errored out with exit status 1: /usr/local/bin/python /usr/local/lib/python3.8/site-packages/pip/_vendor/pep517/_in_process.py prepare_metadata_for_build_wheel /tmp/tmpdj2d13lc Check the logs for full command output.
The same thing happens with numpy.
My Docker container and host machine use the exact same CPython version (3.8.2) and are both x86_64. How come the pre-compiled library isn't installed both places? Is this something I can control?