Count frequency of combinations of elements in python

Question

I have the following df:

What I want to do is to count the frequency of combination of elements. For example:

umbrella appears 8 times in the whole df
detergent appears 5 times
(beer, diaper) appear 2 times
(beer, milk) appear 2 times
(umbrella, milk, beer) appear 2 times

and so on, in other words, I need to generate something like this:

Count all the frequencies of single and combined items and only keep those both single and combined items with frequency >= n, where n is any positive integer. For this example let's say n -> {1, 2, 3, 4}.

I've been trying to use the following code:

# candidates itemsets
records = []

# generates a list of lists of products that were bought together (convert df to list of lists)
for i in range(0, num_records):
    records.append([str(data.values[i,j]) for j in range(0, len(data.columns))])
    
# clean list (delete NaN values)
records = [[x for x in y if str(x) != 'nan'] for y in records]

OUTPUT:
[['detergent'],
 ['bread', 'water'],
 ['bread', 'umbrella', 'milk', 'diaper', 'beer'],
 ['detergent', 'beer', 'umbrella', 'milk'],
 ['cheese', 'detergent', 'diaper', 'umbrella'],
 ['umbrella', 'water', 'beer'],
 ['umbrella', 'water'],
 ['water', 'umbrella'],
 ['diaper', 'water', 'cheese', 'beer', 'detergent', 'umbrella'],
 ['umbrella', 'cheese', 'detergent', 'water', 'beer']]

and then:

setOfItems = []
newListOfItems = []
for item in records:
    if item in setOfItems:
        continue
    setOfItems.append(item)
    temp = list(item)
    occurence = records.count(item)
    temp.append(occurence)
    newListOfItems.append(temp)

OUTPUT:

['detergent', 1]
['bread', 'water', 1]
['bread', 'umbrella', 'milk', 'diaper', 'beer', 1]
['detergent', 'beer', 'umbrella', 'milk', 1]
['cheese', 'detergent', 'diaper', 'umbrella', 1]
['umbrella', 'water', 'beer', 1]
['umbrella', 'water', 1]
['water', 'umbrella', 1]
['diaper', 'water', 'cheese', 'beer', 'detergent', 'umbrella', 1]
['umbrella', 'cheese', 'detergent', 'water', 'beer', 1]

As you can see, it is only counting the freq of the whole row (from image 1), however my expected output is the one that appears in the second image.

user_3489155 · Answer

Interesting problem! I am using itertools.combinations() to generate all possible combinations and collections.Counter() to count for every combination how often it appears:

import pandas as pd
import itertools
from collections import Counter

# create sample data
df = pd.DataFrame([
    ['detergent', np.nan],
    ['bread', 'water', None],
    ['bread', 'umbrella', 'milk', 'diaper', 'beer'],
    ['umbrella', 'water'],
    ['water', 'umbrella'],
    ['umbrella', 'water']
])

def get_all_combinations_without_nan_or_None(row):
    # remove nan, None and double values
    set_without_nan = {value for value in row if isinstance(value, str)}
    
    # generate all possible combinations of the values in a row
    all_combinations = []
    for i in range(1, len(set_without_nan)+1):
        result = list(itertools.combinations(set_without_nan, i))
        all_combinations.extend(result)
        
    return all_combinations
    
# get all posssible combinations of values in a row
all_rows = df.apply(get_all_combinations_without_nan_or_None, 1).values
all_rows_flatten = list(itertools.chain.from_iterable(all_rows))

# use Counter to count how many there are of each combination
count_combinations = Counter(all_rows_flatten)

Docs on collections.Counter():
https://docs.python.org/2/library/collections.html#collections.Counter

Docs on itertools.combinations():
https://docs.python.org/2/library/itertools.html#itertools.combinations

Count frequency of combinations of elements in python

1 Answers