How to convert a list of Pydantic BaseModels to Pandas Dataframe

user_4461051 0
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I can't seem to find any built-in way of simply converting a list of Pydantic BaseModels to a Pandas Dataframe.

from pydantic import BaseModel
import pandas as pd

class SomeModel(BaseModel):
    col1: str
    col2: str

data = [SomeModel(**{'col1': 'foo', 'col2': 'bar'})] * 10
pd.DataFrame(data)

Output

>>         0            1
>> 0  (col1, foo)  (col2, bar)
>> 1  (col1, foo)  (col2, bar)
>> ...

In this way the columns are loaded as data. A workaround is to do the following

pd.Dataframe([model.dict() for model in data])

Output

>>    col1 col2
>> 0  foo  bar
>> 1  foo  bar
>> ...

However this method is a bit slow for larger amounts of data. Is there a faster way?

pydantic pandas python
2 Answers

A quick and dirty profiling yield the following values:

from pydantic import BaseModel
import pandas as pd
from fastapi.encoders import jsonable_encoder
class SomeModel(BaseModel):
    col1: int
    col2: str

data = [SomeModel(col1=1,col2="foo"),SomeModel(col1=2,col2="bar")]*4*10**5

import cProfile

cProfile.run( 'pd.DataFrame([s.dict() for s in data])' ) # around 8.2s
cProfile.run( 'pd.DataFrame(jsonable_encoder(data))' ) # around 30.8s
cProfile.run( 'pd.DataFrame([s.__dict__ for s in data])' ) # around 1.7s
cProfile.run( 'pd.DataFrame([dict(s) for s in data])' ) # around 3s
user_60573820

Not sure if it's faster, but FastAPI exposes jsonable_encoder which essentially performs that same transformation on an arbitrarily nested structure of BaseModel:

from fastapi.encoders import jsonable_encoder
pd.DataFrame(jsonable_encoder(data))
user_23363730
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