Using tensorflow.keras model in pyspark UDF generates a pickle error

Question

I would like to use a tensorflow.keras model in a pysark pandas_udf. However, I get a pickle error when the model is being serialized before sending it to the workers. I am not sure I am using the best method to perform what I want, therefore I will expose a minimal but complete example.

Packages:

tensorflow-2.2.0 (but error is triggered to all previous versions too)
pyspark-2.4.5

The import statements are:

import pandas as pd
import numpy as np

from tensorflow.keras.models import Sequential
from tensorflow.keras.layers import Dense

from pyspark.sql import SparkSession, functions as F, types as T

The Pyspark UDF is a pandas_udf:

def compute_output_pandas_udf(model):
    '''Spark pandas udf for model prediction.'''

    @F.pandas_udf(T.DoubleType(), F.PandasUDFType.SCALAR)
    def compute_output(inputs1, inputs2, inputs3):
        pdf = pd.DataFrame({
            'input1': inputs1,
            'input2': inputs2,
            'input3': inputs3
        })
        pdf['predicted_output'] = model.predict(pdf.values)
        return pdf['predicted_output']

    return compute_output

The main code:

# Model parameters
weights = np.array([[0.5], [0.4], [0.3]])
bias = np.array([1.25])
activation = 'linear'
input_dim, output_dim = weights.shape

# Initialize model
model = Sequential()
layer = Dense(output_dim, input_dim=input_dim, activation=activation)
model.add(layer)
layer.set_weights([weights, bias])

# Initialize Spark session
spark = SparkSession.builder.appName('test').getOrCreate()

# Create pandas df with inputs and run model
pdf = pd.DataFrame({
    'input1': np.random.randn(200),
    'input2': np.random.randn(200),
    'input3': np.random.randn(200)
})
pdf['predicted_output'] = model.predict(pdf[['input1', 'input2', 'input3']].values)

# Create spark df with inputs and run model using udf
sdf = spark.createDataFrame(pdf)
sdf = sdf.withColumn('predicted_output', compute_output_pandas_udf(model)('input1', 'input2', 'input3'))
sdf.limit(5).show()

This error is triggered when compute_output_pandas_udf(model) is called:

PicklingError: Could not serialize object: TypeError: can't pickle _thread.RLock objects

I found this page about pickling a keras model and tried it on tensorflow.keras but I got the following error when the predict function of the model is called in the UDF (so serialization worked but unserialization not?):

AttributeError: 'Sequential' object has no attribute '_distribution_strategy'

Anyone has an idea about how to proceed? Thank you in advance!

PS: Note that I did not use a model directly from keras library because I have another error appearing periodically and it seems more difficult to solve it. However, the serialization of the model does not generate an error as with the tensorflow.keras model.

user_13238964 · Answer

So it looks like that if we use the solution to extend the getstate and setstate methods directly in the tensorflow.keras.models.Model class as in http://zachmoshe.com/2017/04/03/pickling-keras-models.html, then the workers are not able to unserialize the model as they don't have this extension of the class.

Then, the solution is to use a wrapper class as Erp12 suggested in this post.

class ModelWrapperPickable:

    def __init__(self, model):
        self.model = model

    def __getstate__(self):
        model_str = ''
        with tempfile.NamedTemporaryFile(suffix='.hdf5', delete=True) as fd:
            tensorflow.keras.models.save_model(self.model, fd.name, overwrite=True)
            model_str = fd.read()
        d = { 'model_str': model_str }
        return d

    def __setstate__(self, state):
        with tempfile.NamedTemporaryFile(suffix='.hdf5', delete=True) as fd:
            fd.write(state['model_str'])
            fd.flush()
            self.model = tensorflow.keras.models.load_model(fd.name)

The UDF becomes:

def compute_output_pandas_udf(model_wrapper):
    '''Spark pandas udf for model prediction.'''

    @F.pandas_udf(T.DoubleType(), F.PandasUDFType.SCALAR)
    def compute_output(inputs1, inputs2, inputs3):
        pdf = pd.DataFrame({
            'input1': inputs1,
            'input2': inputs2,
            'input3': inputs3
        })
        pdf['predicted_output'] = model_wrapper.model.predict(pdf.values)
        return pdf['predicted_output']

    return compute_output

And the main code:

# Model parameters
weights = np.array([[0.5], [0.4], [0.3]])
bias = np.array([1.25])
activation = 'linear'
input_dim, output_dim = weights.shape

# Initialize keras model
model = Sequential()
layer = Dense(output_dim, input_dim=input_dim, activation=activation)
model.add(layer)
layer.set_weights([weights, bias])
# Initialize model wrapper
model_wrapper= ModelWrapperPickable(model)

# Initialize Spark session
spark = SparkSession.builder.appName('test').getOrCreate()

# Create pandas df with inputs and run model
pdf = pd.DataFrame({
    'input1': np.random.randn(200),
    'input2': np.random.randn(200),
    'input3': np.random.randn(200)
})
pdf['predicted_output'] = model_wrapper.model.predict(pdf[['input1', 'input2', 'input3']].values)

# Create spark df with inputs and run model using udf
sdf = spark.createDataFrame(pdf)
sdf = sdf.withColumn('predicted_output', compute_output_pandas_udf(model_wrapper)('input1', 'input2', 'input3'))
sdf.limit(5).show()

user_10169485 · Answer

The simplest solution is to broadcast model's weights and load weights inside pandas_udf. Here is a demo example:

import pandas as pd
import numpy as np
from tensorflow.keras.layers import Input, Dense
from tensorflow.keras.models import Model

# spark = SparkSession.builder.xxx.getOrCreate()
# sc = spark.sparkContext

def build_model():
    inputs = Input(shape=(3,), name='inputs')
    d1 = Dense(20, name='dense_01')(inputs)
    d2 = Dense(50, name='dense_02')(d1)
    o = Dense(1, activation='sigmoid', name='output')(d2)
    net = Model(inputs=inputs, outputs=o)

    return net

net = build_model()
ws = net.get_weights()
bc_model_state = sc.broadcast(ws)

@pandas_udf(FloatType())
def batch_predict(data):  # input: pd.Series; output: pd.Series
    mdl = build_model()
    mdl.set_weights(bc_model_state.value)

    prediction = mdl.predict(data.values)
    return pd.Series(prediction[:, 0])

This solution is not only applicable to tensorflow keras model, but also suitable for pytorch model. Check this

Using tensorflow.keras model in pyspark UDF generates a pickle error

2 Answers