How to set a value for a specific threshold in SVC model and generate a confusion matrix?

user_12126272 0
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I need to set a value to a specific threshold and generate a confusion matrix. The data is in a csv file (11,1 MB), this link for download is: https://drive.google.com/file/d/1cQFp7HteaaL37CefsbMNuHqPzkINCVzs/view?usp=sharing?

First, i received a error message: ""AttributeError: predict_proba is not available when probability=False"" So i used this for correction:

svc = SVC(C=1e9,gamma= 1e-07)
scv_calibrated = CalibratedClassifierCV(svc)
svc_model = scv_calibrated.fit(X_train, y_train)

I saw a lot on the internet and I didn't quite understand how a specific threshold value is being persolanized. Sounds pretty hard. Now, i see a wrong output: 

array([[   0,    0],
       [5359,   65]])

I have no idea whats is somenthing wrong.

i need help and i'm new in that. thanks

from sklearn.model_selection import train_test_split

df = pd.read_csv('fraud_data.csv')

X = df.iloc[:,:-1]
y = df.iloc[:,-1]

X_train, X_test, y_train, y_test = train_test_split(X, y, random_state=0)



def answer_four():
    from sklearn.metrics import confusion_matrix
    from sklearn.svm import SVC
    from sklearn.calibration import CalibratedClassifierCV
    from sklearn.model_selection import train_test_split


    svc = SVC(C=1e9,gamma= 1e-07)
    scv_calibrated = CalibratedClassifierCV(svc)
    svc_model = scv_calibrated.fit(X_train, y_train)

    # set threshold as -220
    y_pred = (svc_model.predict_proba(X_test)[:,1] >= -220) 

    conf_matrix = confusion_matrix(y_pred, svc_model.predict(X_test))

    return conf_matrix
answer_four()

This function should return a confusion matrix, a 2x2 numpy array with 4 integers.

scikit-learn machine-learning python
2 Answers

This code produces the expected output, in addition to the fact that in the previous code I was using the confusion matrix incorrectly I should have also used decision_function and getting the output filtering the 220 threshold.

def answer_four():
    from sklearn.metrics import confusion_matrix
    from sklearn.svm import SVC
    from sklearn.calibration import CalibratedClassifierCV
    from sklearn.model_selection import train_test_split

    #SVC without mencions of kernel, the default is rbf
    svc = SVC(C=1e9, gamma=1e-07).fit(X_train, y_train)

    #decision_function scores: Predict confidence scores for samples
    y_score = svc.decision_function(X_test)

    #Set a threshold -220
    y_score = np.where(y_score > -220, 1, 0)
    conf_matrix = confusion_matrix(y_test, y_score)

####threshold###
#input threshold in the model after trained this model
#threshold is a limiar of separation of class   

return conf_matrix

answer_four()
#output: 
array([[5320,   24],
       [  14,   66]])
user_121262720

You are using the confusion matrix in a wrong way.

The idea behind the confusion matrix is to have a picture as to how good our predictions y_pred are compared with the ground truth y_true, usually in a test set.

What you actually do here is computing a "confusion matrix" between your predictions with the custom threshold of -220 (y_pred), compared to some other predictions with the default threshold (the output of svc_model.predict(X_test)), which does not make any sense.

Your ground truth for the test set is y_test; so, to get the confusion matrix with the default threshold, you should use

confusion_matrix(y_test, svc_model.predict(X_test))

To get the confusion matrix with your custom threshold of -220, you should use

confusion_matrix(y_test, y_pred)

See the documentation for more details in the usage (which is your best friend, and should always be the first place to look at, when having issues or doubts).

user_46854710
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