Change order/position of nodes in plot of networkx

Question

I am having a pandas dataframe and want to plot a network based on the dataframe. The current plot looks like:

It starts in the right above corner and goes to the left one. If i plot it the next time, it can have a different starting position, how can I avoid it? And furthermore how can I set the starting node into the left above corner and the end node (which i can also decline upfront) set always in the right down corner?

My code until now is:

###make the graph based on my dataframe
G3 = nx.from_pandas_edgelist(df2, 'Activity description', 'Activity followed', create_using=nx.DiGraph(), edge_attr='weight')

#plot the figure and decide about the layout
plt.figure(3, figsize=(18,18))
pos = nx.spring_layout(G3, scale=2)

#draw the graph based on the labels
nx.draw(G3, pos, node_size=500, alpha=0.9, labels={node:node for node in G3.nodes()})

#make weights with labels to the edges
edge_labels = nx.get_edge_attributes(G3,'weight')
nx.draw_networkx_edge_labels(G3, pos, edge_labels = edge_labels)
plt.title('Main Processes')

#save and plot the ifgure
plt.savefig('StandardProcessflow.png')
plt.show()

packages I use is networkx and matlotlib

user_11227781 · Answer

You can use seed attribute of spring_layout to prevent your graph nodes from moving each draw:

seed

(int, RandomState instance or None optional (default=None)) – Set the random state for deterministic node layouts. If int, seed is the seed used by the random number generator, if numpy.random.RandomState instance, seed is the random number generator, if None, the random number generator is the RandomState instance used by numpy.random.

Or specify a layout by yourself, like:

pos = {
    1: [0, 1],
    2: [2, 4]
    ...
}

You can combine both methods:

G3 = nx.Graph()
G3.add_weighted_edges_from([
    (1,2,1),
    (2,3,2),
    (3,4,3),
    (3,6,1),
    (4,5,4)
])

pos = nx.spring_layout(G3, scale=2, seed=84)
pos[1] = [-20, 0]
pos[5] = [20, 0]

nx.draw(
    G3,
    pos,
    node_size=500,
    alpha=0.9,
    labels={node:node for node in G3.nodes()}
)

edge_labels = nx.get_edge_attributes(G3,'weight')
nx.draw_networkx_edge_labels(G3, pos, edge_labels = edge_labels)

You can use it if you want to set particular nodes in special places.

Change order/position of nodes in plot of networkx

1 Answers