Multiline equations when converting from jupyter notebook to tex

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I'm using nbconvert to convert from Jupyter notebook containing MathJax equations to tex files. One problem is that multi-line equations which contain alignment, i.e.

$$
/begin{align}
...
/end{align}
$$

are converted in tex to

\[
\begin{align}
...
\end{align}
\]

And it yield a tex bug: `unexpected close display math ] after \begin{document}

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