Installing Qiime2 on Colab

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Does anyone have any suggestions on how to install Qiime2 on Colab? I can't seem to get it to work with !pip install qiime2.

1 Answers

Is it possible to create a conda environment in Colab? If you check QIIME2's page (link below), it indicates that first you install conda/miniconda and in conda you create a QIIME2 environment. As far as I know, to run QIIME2 you use the "source activate" command instead of python-based commands

Best!

https://docs.qiime2.org/2018.11/install/native/

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