I am relatively new to R and even more new to Shiny (literally first day).
I would like a user to input multiple phrases separated by a comma such as female, aged, diabetes mellitus. I have a dataframe in which one variable, MH2 contains text words. I would like to output a dataframe that contains only the rows in which all of the inputted phrases are present. Sometimes a user may input only one phrase, other times 5.
This is my ui.R
library(shiny)
library(stringr)
# load dataset
load(file = "./data/all_cardiovascular_case_reports.Rdata")
ui <- fluidPage(
sidebarLayout(
sidebarPanel(
textInput(inputId = "phrases",
label = "Please enter all the MeSH terms that you would like to search, each separated by a comma:",
value = ""),
helpText("Example: female, aged, diabetes mellitus")
),
mainPanel(DT::dataTableOutput("dataframe"))
)
)
and here is my server.R
library(shiny)
server <- function(input, output)
{
# where all the code will go
df <- reactive({
# counts how many phrases there are
num_phrases <- str_count(input$phrases, pattern = ", ") + 1
a <- numeric(num_phrases) # initialize vector to hold all phrases
# create vector of all entered phrases
for (i in 1:num_phrases)
{
a[i] <- noquote(strsplit(input$phrases, ", ")[[i]][1])
}
# make all phrases lowercase
a <- tolower(a)
# do exact case match so that each phrase is bound by "\\b"
a <- paste0("\\b", a, sep = "")
exact <- "\\b"
a <- paste0(a, exact, sep = "")
# subset dataframe over and over again until all phrases used
for (i in 1:num_phrases)
{
final <- final[grepl(pattern = a, x = final$MH2, ignore.case = TRUE), ]
}
return(final)
})
output$dataframe <- DT::renderDataTable({df()})
}
When I tried running renderText({num_phrases}) I consistently got 1 even when I would input multiple phrases separated by commas. Since then, whenever I try to input multiple phrases, I run into "error: subscript out of bounds." However, when I enter the words separated by a comma only versus a comma and space (entering "female,aged" instead of "female, aged") then that problem disappears, but my dataframe doesn't subset correctly. It can only subset one phrase.
Please advise.
Thanks.