ng-cli: hidden .git directory is created ? Breaking the link?

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I have just started to use the NG cli, everything is working but I notice that it has created a hidden directory .git which is where git is managed. Problem is that I have placed the generated directory by ng-cli into an existing repository and now my IDE is complaining that the directory where ng-cli created its files is an UNREGISTERED ROOT.

So the quick fix here would be to just remove the .git directory, I have already a .git create further down and my application level ROOT>

Is this safe to do?

Why does the ng-cli create the git-managed directory ?

Any ideas ? I am confused if it is safe to delete it or not ?

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