How to structure Tensorflow model code?

I am having difficulty finding how to structure my Tensorflow model code. I would like to structure it in the form of a Class for ease for future reuse. Also, my current structure is messy and the tensorboard graph output have multiple "model" inside.

The following is what i have currently:

import tensorflow as tf
import os

from utils import Utils as utils

os.environ['TF_CPP_MIN_LOG_LEVEL'] = '3'

class Neural_Network:
    # Neural Network Setup
    num_of_epoch = 50

    n_nodes_hl1 = 500
    n_nodes_hl2 = 500
    n_nodes_hl3 = 500

    def __init__(self):
        self.num_of_classes = utils.get_num_of_classes()
        self.num_of_words = utils.get_num_of_words()

        # placeholders
        self.x = tf.placeholder(tf.float32, [None, self.num_of_words])
        self.y = tf.placeholder(tf.int32, [None, self.num_of_classes])

        with tf.name_scope("model"):
            self.h1_layer = tf.layers.dense(self.x, self.n_nodes_hl1, activation=tf.nn.relu, name="h1")
            self.h2_layer = tf.layers.dense(self.h1_layer, self.n_nodes_hl2, activation=tf.nn.relu, name="h2")
            self.h3_layer = tf.layers.dense(self.h2_layer, self.n_nodes_hl3, activation=tf.nn.relu, name="h3")

            self.logits = tf.layers.dense(self.h3_layer, self.num_of_classes, name="output")

    def predict(self):
        return self.logits

    def make_prediction(self, query):
        result = None

        with tf.Session() as sess:
            saver = tf.train.import_meta_graph('saved_models/testing.meta')
            saver.restore(sess, 'saved_models/testing')

            sess.run(tf.global_variables_initializer())

            prediction = self.predict()
            prediction = sess.run(prediction, feed_dict={self.x : query})
            prediction = prediction.tolist()
            prediction = tf.nn.softmax(prediction)
            prediction = sess.run(prediction)
            print prediction

            return utils.get_label_from_encoding(prediction[0])

    def train(self, data):

        print len(data['values'])
        print len(data['labels'])

        prediction = self.predict()

        cost = tf.reduce_mean(tf.nn.softmax_cross_entropy_with_logits(logits=prediction, labels=self.y))
        optimizer = tf.train.AdamOptimizer().minimize(cost)

        with tf.Session() as sess:
            sess.run(tf.global_variables_initializer())

            writer = tf.summary.FileWriter("mygraph/logs", tf.get_default_graph())

            for epoch in range(self.num_of_epoch):
                optimised, loss = sess.run([optimizer, cost],
                                           feed_dict={self.x: data['values'], self.y: data['labels']})

                if epoch % 1 == 0:
                    print("Completed Training Cycle: " + str(epoch) + " out of " + str(self.num_of_epoch))
                    print("Current Loss: " + str(loss))

                    saver = tf.train.Saver()
                    saver.save(sess, 'saved_models/testing')
                    print("Model saved")

What i have found online is that many use much lower level code such as tf.Variables and tf.Constant hence, they are much more able to split up their code. However, as I am relatively new to Tensorflow, I would like to use higher level code first.

Can anyone advise me on how to structure my code?