Eclipse freezes when creating project/class (no loading bar showing)

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When creating new project (Java) in Eclipse Mars.2 version, there's a problem, that appears as like "freezing" of Eclipse: after clicking finish, CPU usage jumps high, it shows that it is building the project but everything is still - there's not even a loading bar underneath.

It appears the same when creating Java classes. The same happens when I start program from terminal - with and without "sudo". While loading everything, I seem to see no errors.

What could be wrong? Dunno with what I should even start, but tell me, what specific info I should provide to investigate this. I have tried changing GTK theme to something else, reinstalled Eclipse n-th times (did that by unarchiving and using installer provided from eclipse.org), reinstalled Java from ground-up, still nothing changes.

Dealing with this over 2 months, still can't find any solution. Many things I have tried, even researched related topics before posting this. Nothing helped from there.

Using now Ubuntu 16.04 (unstable, but it shouldn't be a problem, I guess).

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