Undeploy web application from tomcat doesn't remove the deployed directory

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I am using tomcat manager commands to deploy and undeploy web applications on a tomcat server. The problem is when I try to undeploy a web application, it does remove the .war file from the webapps directory but the exploded directory doesn't get removed (the WEB-INF/lib folder), neither from the List Applications in the tomcat mananger.

I am on Windows and I am using Tomcat 6.0.20.

Note: When I tried to delete the directory manually it gave me an error saying that the file is being used by another program.

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