Validate XML with loading schemas at runtime, failure depending on schema order

I am trying to do xml validation. I am being given a list of schemas at run-time (possibly wrapped in a jar). Validation passes or failes based on the order in which I provide the schemas to the SchemaFactory.

Here is what I am doing:

  private void validateXml(String xml, List<URI> schemas){
        Source[] source = new StreamSource[schemas.size()];
        int i=0;
        for (URI f : schemas){
           source[i++] = new StreamSource(f.openStream());
        }

        SchemaFactory sf = SchemaFactory.newInstance(XMLConstants.W3C_XML_SCHEMA_NA_URI);
        sf.setResourceResolver(new MyClassPathResourceResolver());

        Schema schema = schemaFactory.newSchema(source);
        Validator validator = schema.newValidator();
        validator.validate(new StreamSource(new ByteArrayInputStream(xml.getBytes()));

again, this fails if the passed set of schema do not start with the schema to which the root element of the xml referrs. Is there a fix to this or am I doing something wrong?