Selecting commits to send in a pull-request

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I forked a project on GitHub. Being a pure Java source, I had to adapt it to turn it into an eclipse project before working on it. I made 3 commits to reflect these changes.

I then finished adapting the actual program, and I want to send a pull-request back to the developer requesting these changes.

My commit history is as follows:

  • Commits #1, #3 and #4 are eclipse based and should not be sent.
  • #2, #5, #6, #7 and #8 are source related and should be sent.

How do I send a pull-request omitting #1, #3 and #4?

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