pydev debugger: unable to find real location for python 2.7 after OS 10.8 upgrade

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I just upgraded to OS X 10.8 Mountain Lion and having troubles understanding how the pydev debugger should work on Aptana 3.0.

In Aptana's preferences I have the python interpreter setup with a location of "/usr/bin/python". It states that the System libs are coming from "/System/Library/Frameworks/Python.framework/Versions/2.7/..."

When I start the debugger for my Google App Engine project within Aptana, the console logs:

pydev debugger: CRITICAL WARNING: This version of python seems to be incorrectly compiled (internal generated filenames are not absolute)
pydev debugger: The debugger may still function, but it will work slower and may miss breakpoints.

It also states:

pydev debugger: Unable to find real location for: /System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.py
pydev debugger: Unable to find real location for: /Applications/Aptana Studio 3/plugins/org.python.pydev.debug_2.2.2.2011100512/pysrc/pydevd.py
pydev debugger: Unable to find real location for: /System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/posixpath.py
...

And it lists out all of the .py files within the "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/" folder.

My app engine projects still loads, but I don't really understand why. What do I have to configure Aptana 3.0, and what's changed between my OSX 10.7 and 10.8 that made this critical warning come up?

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