A JavaScript script only works on Internet Explorer when the Internet Explorer Developer Toolbar is visible

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I got a script working on Firefox 5 but not with Internet Explorer 9. When I just open the Internet Explorer Developer Toolbar addon and try the same actions as before - it works. There is other JavaScript code on the page which is working, so it is just a part that isn't.

Is there something like the developer toolbar changing any options of Internet Explorer while running?

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