I'm attempting to write some code to generate a model for 3D segmentation. I'm using a model code provided by the creators of Stardist to write my code but I keep getting an assertion error and I'm not sure how to fix it.
Here is the code provided:
Screenshot of the code from Stardist github page
Here is my attempt at reconstructing the code with the error I get when I attempt to run it.
I was wondering if people had any solutions for the problem I'm getting? I'm almost completely new to coding and using github as a whole so not sure if there's a way to create a direct download link, like they have, or if it should just be able to find my files directly off my hardrive. I also attach a picture of how my files are labelled so can't see why the code can't assertain they have the same labeling:
Image of my pathway for first, the images
and secondly, the masks.
Thank you all,
N