A cool example for the Renesas Synergy SK-S7G2 to try out without a Board support package. I think its worth it to point it out.
This is not a question, more a summary about the example with the code for future users.
The LED circuit (page 12 in Schematic). Green LED is connected to signal 00 of Port6.

The Port6 address: 0x400400C0
With low voltage (0) we can turn the green LED on, and with high voltage (1) off.
This is managed by bit 16 PODR 00 of the Port6 control register 1 PCNTR1 with the address 0x400400C0. Page 451 user manual.

Configure Port6 as output so microcontroller sends a signal to port6. Write the data to Port6 Control Register 1. The program uses the green and red LEDs to display the binary number input by push buttons S4 and S5 in binary format.