How to install the development version of lightgbm for R?

userN8wZ 0
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I've been having trouble saving lightgbm boosters after running a model with the bonsai and the tidymodels package (as in this StackOverflow thread How to save Tidymodels Lightgbm model for reuse - however, I never managed to get it to work).

Therefore, reading about it (and as it says on the update in the abovementioned StackOverflow thread) led me to find out that the development version of the lightgbm package (version 4.0 I believe) supports using saveRDS and readRDS directly for their lightgbm models.

The thing is, I don't know how to install the development version of lightgbm. Reading this thread I can see that James, who's one of the maintainers of the lightgbm package, wrote this (https://github.com/tidymodels/bonsai/issues/34):

"If you already have a local installation of LightGBM, you can re-install from the latest development version by running the following:"

REPO_DIR="${HOME}/repos"
cd "${REPO_DIR}/lgb-dev"
git checkout master
git pull origin master
git submodule update --recursive

sh build-cran-package.sh \
    --no-build-vignettes

R CMD INSTALL \
    --with-keep.source \
    ./lightgbm_*.tar.gz

My problem is that I do not understand this code. Is it supposed to be run in R? (this does not work for me). Or in the command line? Which language is this?

If anyone can help me out regarding installation of the dev version of the lightgbm package, I would be really grateful

lightgbm tidymodels r
1 Answers

The code you've provided is the preferred way to install the development version of {lightgbm} (the R package for LightGBM).

That can be run from any shell that understands Unix commands, as long as you have git and R installed. If you're on a Mac, you could for example use the Terminal application. If you're on a Windows machine, you could use Git for Windows.

Unfortunately, {lightgbm} cannot be installed from its git repo using R-only tools like remotes::install_github(). That is intentional, as described in https://github.com/tidymodels/bonsai/issues/34#issuecomment-1187589193.

If you are not comfortable using git and the command line, the following R-only solution could be used to install the latest development version of {lightgbm}.

library(httr)
library(jsonlite)

TEMP_DIR <- "tmp-lightgbm"

if (!dir.exists(TEMP_DIR)) {
    dir.create(TEMP_DIR)
}
builds_response <- httr::RETRY(
    verb = "GET"
    , url = "https://dev.azure.com/lightgbm-ci/lightgbm-ci/_apis/build/builds?branchName=refs/heads/master&resultFilter=succeeded&queryOrder=finishTimeDescending&%24top=1&api-version=7.1-preview.7"
)
build_id <- jsonlite::fromJSON(
    txt = httr::content(builds_response, as = "text")
    , simplifyDataFrame = FALSE
)[["value"]][[1L]][["id"]]
artifact_url <- paste0(
    "https://dev.azure.com/lightgbm-ci/lightgbm-ci/_apis/build/builds/"
    , build_id
    , "/artifacts?artifactName=R-package&api-version=7.1-preview.5&%24format=zip"
)
download.file(
    url = artifact_url
    , destfile = file.path(TEMP_DIR, "lightgbm-r.zip")
)
unzip(
    zipfile = file.path(TEMP_DIR, "lightgbm-r.zip")
    , exdir = file.path(TEMP_DIR, "extracted")
)
artifacts_dir <- file.path(TEMP_DIR, "extracted", "R-package")
tarball_path <- list.files(
    path = artifacts_dir
    , pattern = "lightgbm-[0-9.]+-r-cran\\.tar\\.gz"
    , full.names = TRUE
)[[1L]]
new_tarball_path <- file.path(artifacts_dir, "lightgbm.tar.gz")
file.rename(tarball_path, new_tarball_path)

install.packages(new_tarball_path, repos = NULL, type = "source")
James Lamb0
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