I am trying to use the CCA package in R but it keeps breaking and just runs very slow. At first I tried it with ~11k features between two data sets one with 2k samples and another with 8k samples. This ran for several hours and until I shut it down. Then I tried by reducing down to 2k features same number of samples. Now I've reduced it to 2k features and 1k samples per X and Y and its still not working. Thinking of switching to this seedCCA package.
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